Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus PRRSV reveals pathway differences between pigs with alternate genotypes for a major host response QTL
Author(s): Schroyen, M., Eisley, C., Koltes, J.E., Fritz-Waters, E., Choi, I., Plastow, G., Guan, L., Stothard, P., Bao, H., Kommadath, A., Reecy, J.M., Lunney, J.K., Rowland, R.R.R., Dekkers, J.C.M., Tuggle, C.K.
Publication Date:
2016
Publication: BMC Genomics
Volume: 17
Page Numbers: 196
Comparative transcriptomic analysis of rectal tissue from beef steers revealed reduced host immunity in Escherichia coli O157:H7 super-shedders
Author(s): Wang, O., Liang, G., McAllister, T.A., Plastow, G., Stanford, K., Selinger, B., Guan, L.L.
Publication Date:
2016
Publication: PLoS ONE
Volume: 11
Issue: 3
Page Numbers: e0151284
Differences in Whole Blood Gene Expression Associated With Infection Time-course and Extent of Fetal Mortality in a Reproductive Model of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection
Author(s): Wilkinson, J.M., Ladinig, A., Bao, H., Kommadath, A., Stothard, P., Lunney, J.K., Harding, J.C.S., Plastow, G.S.
Publication Date:
2016
Publication: PLoS ONE
Volume: 11
Issue: 4
Page Numbers: e0153615
Genome wide association studies (GWAS) identify QTL on SSC2 and SSC17 affecting loin peak shear force in crossbred commercial pigs
Author(s): Zhang, C., Bruce, H., Yang, T., Charagu, P., Kemp, R.A., Boddicker, N., Miar, Y., Wang, Z., Plastow, G.
Publication Date:
2016
Publication: PLoS ONE
Volume: 11
Issue: 2
Page Numbers: e0145082
Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus
Author(s): Wilkinson, J., Bao, H., Ladinig, A., Hong, L., Stothard, P., Lunney, J., Plastow, G., Harding, J.
Publication Date:
2016
Publication: BMC Genomics
Volume: 17
Page Numbers: 383
Use of genomic tools to improve cattle health in the context of infectious diseases
Author(s): Raszek, M.M., Guan, L.L., Plastow, G.S.
Publication Date:
2016
Publication: Frontiers in Genetics
Volume: 7
Page Numbers: 30
A genome-wide association study of fetal response to type 2 porcine reproductive and respiratory syndrome virus challenge
Author(s): Yang, T., Wilkinson, J., Wang, Z., Ladinig, A., Harding, J., Plastow, G.
Publication Date:
2016
Publication: Scientific Reports
Volume: 6
Page Numbers: 20305
Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes
Author(s): Lu, D., Akanno, E.C., Crowley, J.J., Schenkel, F., Li, H., De Pauw, M., Moore, S.S., Wang, Z., Li, C., Stothard, P., Plastow, G., Miller, S.P., Basarab, J.A
Publication Date:
2016
Publication: J. Anim. Sci.
Volume: 94
Page Numbers: 1342-1353
Dominant Red Coat Color in Holstein Cattle Is Associated with a Missense Mutation in the Coatomer Protein Complex, Subunit Alpha (COPA) Gene
Author(s): Dorshorst, B., Henegar, C., Liao, X., Sällman Almén, M., Rubin, C.-J., Ito, S., Wakamatsu, K., Stothard, P., Van Doormaal, B., Plastow, G., Barsh, G.S., Andersson, L.
Publication Date:
2015
Publication: PLoS ONE
Volume: 10
Page Numbers: e0128969.
Genome-wide association for heifer reproduction and calf performance traits in beef cattle
Author(s): Akanno, E.C., Plastow, G.S., Fitzsimmons, C., Miller, S.P., Baron, V.S., Ominski, K., Basarab, J.A.
Publication Date:
2015
Publication: Genome
Volume: 12
Page Numbers: 549-557
Genome-wide association studies (GWAS) identify a QTL close to PRKAG3 affecting meat pH and colour in crossbred commercial pigs
Author(s): Zhang, Z., Wang, Z., Bruce, H., Kemp, R.A., Charagu, P., Miar, Y., Yang, T., Plastow, G.S.
Publication Date:
2015
Publication: BMC Genetics
Volume: 16
Page Numbers: 33
Genome-wide whole blood microRNAome and transcriptome analyses revealed miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine
Author(s): Bao, H., Kommadath, A., Liang, G., Sun, X., Arantes, A., Tuggle, C., Bearson, S., Plastow, G., Stothard, P., Guan, L.L.
Publication Date:
2015
Publication: Scientific Reports
Volume: 5
Page Numbers: 12620
Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
Author(s): Koltes, J.E., Fritz-Waters, E., Eisley, C.J., Choi, I., Bao, H., Kommadath, A., Serão, N.V.L., Boddicker, N.J., Abrams, S.M., Schroyen, M., Loyd, H., Tuggle, C.K., Plastow, G.S., Guan, L., Stothard, P., Lunney, J.K., Liu, P., Carpenter, S., Rowland, R.R.R., Dekkers, J.C.M., Reecy, J.M.
Publication Date:
2015
Publication: BMC Genomics
Volume: 16
Page Numbers: 412
Maternal and fetal predictors of fetal viral load and death in third trimester, type 2 porcine reproductive and respiratory syndrome virus infected pregnant gilts
Author(s): Ladinig, A., Ashley, C., Detmer, S.E., Wilkinson, J.M., Lunney, J.K., Plastow, G., Harding, J.C.S.
Publication Date:
2015
Publication: Veterinary Research
Volume: 46
Page Numbers: 107
Transcriptomic and Epigenetic Profiling of the Lung of Influenza-infected Pigs: A Comparison of Different Birth Weight and Susceptibility Groups
Author(s): Wilkinson, J.M., Gunvaldsen, R.E., Detmer, S.E., Dyck, M.K., Dixon, W.T., Foxcroft, G.R., Plastow, G., Harding, J.C.S.
Publication Date:
2015
Publication: PLoS ONE
Volume: 10
Page Numbers: e0138653
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
Author(s): Andersson, L., Archibald, A.L., Bottema, C.D., Brauning, R., Burgess, S.C., Burt, D.W., Casas, E., Cheng, H.H., Clarke, L., Couldrey, C., Dalrymple, B.P., Elsik, C.G., Foissac, S., Giuffra, E., Groenen, M.A., Hayes, B.J., Huang, L.S., Khatib, H., Kijas, J.W., Kim, H., Lunney, J.K., McCarthy, F.M., McEwan, J.C., Moore, S., Nanduri, B., Notredame, C., Palti, Y., Plastow, G.S., Reecy, J.M., Rohrer, G.A., Sarropoulou, E., Schmidt, C.J., Silverstein, J., Tellam, R.L., Tixier-Boichard, M., Tosser-Klopp, G., Tuggle, C.K., Vilkki, J., White, S.N., Zhao, S., Zhou, H., and The FAANG Consortium
Publication Date:
2015
Publication: Genome Biology
Volume: 16
Page Numbers: 57
A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project
Author(s): Stothard, P., Liao, X., Arantes, A.S., De Pauw, M., Coros, C., Plastow, G.S., Sargolzaei, M., Crowley, J.J., Basarab, J.A., Schenkel, F., Moore, S., Miller, S.P.
Publication Date:
2015
Publication: GigaScience
Volume: 4
Page Numbers: 49
Applications of genomics to improve livestock in the developing world
Author(s): Rothschild, M.F., Plastow, G.S
Publication Date:
2014
Publication: Livestock Science
Volume: 166
Page Numbers: 76-83
Associations between single nucleotide polymorphisms in 33 candidate genes and meat quality traits in commercial pigs
Author(s): Zhang, C.Y., Wang, Z., Bruce, H.L., Janz, J., Goddard, E., Moore, S., Plastow, G.S.
Publication Date:
2014
Publication: Animal Genetics
Volume: 45
Page Numbers: 508–516
Birth Weight, Intrauterine Growth Retardation and Fetal Susceptibility to Porcine Reproductive and Respiratory Syndrome Virus
Author(s): Ladinig, A., Foxcroft, G., Ashley, C., Lunney, J.K., Plastow, G., Harding, J.C.S.
Publication Date:
2014
Publication: PLoS ONE
Volume: 9
Page Numbers: e109541
Cytokine profiles in pregnant gilts experimentally infected with porcine reproductive and respiratory syndrome virus and relationships with viral load and fetal outcome
Author(s): Ladinig, A., Lunney, J.K., Souza, C.J.H., Ashley, C., Plastow, G., Harding, J.C.S.
Publication Date:
2014
Publication: Veterinary Research
Volume: 45
Page Numbers: 113
Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding
Author(s): ommadath, A., Bao, H., Arantes, A.S., Plastow, G.S., Tuggle, C.K., Bearson, S.M.D., Guan, L.L., Stothard, P.
Publication Date:
2014
Publication: BMC Genomics
Volume: 15
Page Numbers: 452
Genetic analysis of reproductive traits and antibody response in a PRRS outbreak herd
Author(s): Serao, N.V.L., Matika, O., Kemp, R.A., Harding, J.C.S., Bishop, S.C., Plastow, G.S., Dekkers, J.C.M.
Publication Date:
2014
Publication: J. Anim. Sci.
Volume: 92
Page Numbers: 2905-2921
Genetic and Phenotypic Parameters for Carcass and Meat Quality Traits in Commercial Crossbred Pigs
Author(s): Miar, Y., Plastow, G.S., Moore, S.S., Manafiazar, G., Charagu, P., Kemp, R.A., Van Haandel, B., Huisman, A.E., Zhang, C.Y., McKay, R.M., Bruce, H.L., Wang, Z.
Publication Date:
2014
Publication: J. Anim. Sci.
Volume: 92
Page Numbers: 2869-2884
Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples
Author(s): Choi, I., Bao, H., Kommadath, A., Hosseini, A., Sun, X., Meng, Y., Stothard, P., Plastow, G.S., Tuggle, C.K., Reecy, J.M., Fritz-Waters, E., Abrams, S.M., Lunney, J.K., Guan, L.L.
Publication Date:
2014
Publication: BMC Genomics
Volume: 15
Page Numbers: 954
Influence of on-farm production practices on sensory and technological quality characteristics of pork loin
Author(s): Omana, D.A., Goddard, E., Plastow, G.S., Janz, J., Ma, L., Anders, S., Moore, S.S., Bruce, H.L.
Publication Date:
2014
Publication: Meat Science
Volume: 96
Page Numbers: 316-320
MicroRNA Buffering and Altered Variance of Gene Expression in Response to Salmonella Infection
Author(s): Bao, H., Kommadath, A., Plastow, G.S., Tuggle, C.K., Guan, L.L., Stothard, P.
Publication Date:
2014
Publication: PLoS ONE
Volume: 9
Page Numbers: e94352
Plasma metabolites associated with residual feed intake and other productivity performance traits in beef cattle
Author(s): Karisa, B.K, Thomson, J., Wang, Z., Li, C., Montanholi, Y., Miller, S.P., Moore, S.S., Plastow, G.S.
Publication Date:
2014
Publication: Livestock Science
Volume: 165
Page Numbers: 200–211
Reliability of molecular breeding values for Warner-Bratzler shear force and carcass traits of beef cattle – An independent validation study
Author(s): Akanno, E.C., Plastow, G., Woodward, B.W., Bauck, S., Okut, H., Wu, X.L., Sun, C., Aalhus, J.L., Moore, S.S., Miller, S.P., Wang, Z., Basarab, J.A.
Publication Date:
2014
Publication: J. Anim. Sci.
Volume: 92
Page Numbers: 2896–2904
Sequence, structural and expression divergence of duplicate genes in the bovine genome
Author(s): Liao, X., Bao, H., Meng, Y., Plastow, G., Moore, S., Stothard, P.
Publication Date:
2014
Publication: PLoS One
Volume: 9
Issue: 7
Page Numbers: e102868
Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle
Author(s): Abo-Ismail, M.K., Vander Voort, G., Squires, J.J., Swanson, K.C., Mandell, I.B., Liao, X., Stothard, P., Moore, S., Plastow, G., Miller, S.P.
Publication Date:
2014
Publication: BMC Genetics
Volume: 15
Page Numbers: 14
Variation in Fetal Outcome, Viral Load and ORF5 Sequence Mutations in a Large Scale Study of Phenotypic Responses to Late Gestation Exposure to Type 2 Porcine Reproductive and Respiratory Syndrome Virus
Author(s): Ladinig, A., Wilkinson, A., Ashley, C., Detmer, S.E., Lunney, J.K., Plastow, G., Harding, J.C.S.
Publication Date:
2014
Publication: Virus. PLoS ONE
Volume: 9
Page Numbers: e96104
Variation in time and magnitude of immune response and viremia in experimental challenges with Porcine circovirus 2b
Author(s): Engle, T., Jobman, E., Moural, T., McKnite, A., Bundy, J., Barnes, S., Davis, E., Galeota, J., Burkey, T., Plastow, G., Kachman, S., Ciobanu, D.
Publication Date:
2014
Publication: BMC Veterinary Research
Volume: 10
Page Numbers: 286
Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle
Author(s): Karisa, B.K., Thomson, J., Wang, Z., Stothard, P., Moore, S.S., Plastow, G.S.
Publication Date:
2013
Publication: J Anim Sci
Volume: 91
Issue: 8
Page Numbers: 3502-3513.
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species
Author(s): Bao, H., Kommadath, A., Sun, X., Meng, Y., Arantes, A.S., Plastow, G.S., Guan, L.L,, Stothard, P.
Publication Date:
2013
Publication: BMC Genomics
Volume: 14
Page Numbers: 609
Genome-wide association analyses for growth and feed efficiency traits in beef cattle
Author(s): Lu, D., Miller, S., Sargolzaei, M., Kelly, M., Voort, G.V., Caldwell, T., Wang, Z., Plastow, G., Moore, S.
Publication Date:
2013
Publication: J Anim Sci
Volume: 91
Page Numbers: 3612-3633
Livestock and the promise of genomics
Author(s): Ludu, J. and Plastow, G
Publication Date:
2013
Publication: Genome
Volume: 56
Page Numbers: 556-566
Pig genomes reveal distinct patterns of artificial versus natural selection
Author(s): Li, M., Tian S., Jin, L., Zhou, G., Li, Y., Zhang, Y., Wang, T., Yeung, C.K.L., Chen, L., Ma, J., Zhang, J., Jiang, A., Li, J., Zhou, C., Zhang, J., Liu, Y., Sun, X., Zhao, H., Niu, Z., Lou, P., Xian, L., Shen, X., Liu, S., Zhang, S., Zhang, M., Zhu, L., Shuai S., Bai, L., Tang, G., Liu, H., Jiang, Y., Mai, M., Xiao, J., Wang, X., Zhou, Q., Wang, Z., Stothard, P., Xue, M., Gao, X., Luo, Z., Gu, Y., Zhu, H., Hu, X., Zhao, Y., Plastow, G.S., Wang, J., Jiang, Z., Li, K., Li, N., Li, X., Li, R.
Publication Date:
2013
Publication: Nature Genetics
Volume: 45
Page Numbers: 1431-1438
Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection
Author(s): Liao, X., Peng, F., Forni, S., McLaren, D., Plastow, G., Stothard, P.
Publication Date:
2013
Publication: Genome
Volume: 56
Page Numbers: 592-598